IL_6XYW_145

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_145 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.1753

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6XYW|1|2|G|771
6XYW|1|2|G|772
6XYW|1|2|G|773
6XYW|1|2|A|774
6XYW|1|2|G|775
*
6XYW|1|2|U|801
6XYW|1|2|C|802

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Ab

Expressed protein

Chain Bj

Probable ribosomal protein S11, mitochondrial