IL_6XYW_150

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GCA*UACCC

Length

8 nucleotides

Bulged bases

6XYW|1|2|C|927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_150 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.416

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|G|926
6XYW|1|2|C|927
6XYW|1|2|A|928
*
6XYW|1|2|U|1729
6XYW|1|2|A|1730
6XYW|1|2|C|1731
6XYW|1|2|C|1732
6XYW|1|2|C|1733

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bf

Ribosomal protein S7, mitochondrial

Chain Bh

30S ribosomal protein S9, mitochondrial