IL_6XYW_152

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_152 not in the Motif Atlas

Homologous match to IL_6CZR_151

Geometric discrepancy: 0.2979

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6XYW|1|2|G|986
6XYW|1|2|A|987
6XYW|1|2|C|988
6XYW|1|2|A|989
6XYW|1|2|U|990
*
6XYW|1|2|A|1036
6XYW|1|2|C|1037

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bm

At2g34520

Chain Bx

37S ribosomal protein S27