IL_6XYW_155

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GG*UCCGC

Length

7 nucleotides

Bulged bases

6XYW|1|2|C|1550, 6XYW|1|2|C|1551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_155 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1974

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6XYW|1|2|G|1049
6XYW|1|2|G|1050
*
6XYW|1|2|U|1549
6XYW|1|2|C|1550
6XYW|1|2|C|1551
6XYW|1|2|G|1552
6XYW|1|2|C|1553

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bb

Ribosomal protein S3, mitochondrial

Chain Bi

40S ribosomal protein S10, mitochondrial

Chain Bm

At2g34520