IL_6XYW_165

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAGU*AGUAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_165 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3081

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6XYW|1|2|G|1431
6XYW|1|2|A|1432
6XYW|1|2|A|1433
6XYW|1|2|G|1434
6XYW|1|2|U|1435
*
6XYW|1|2|A|1446
6XYW|1|2|G|1447
6XYW|1|2|U|1448
6XYW|1|2|A|1449
6XYW|1|2|C|1450

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BK

rPPR*