IL_6XYW_172

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6XYW|1|2|C|1749, 6XYW|1|2|A|1899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_172 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.2131

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|C|1748
6XYW|1|2|C|1749
6XYW|1|2|G|1750
*
6XYW|1|2|C|1897
6XYW|1|2|A|1898
6XYW|1|2|A|1899
6XYW|1|2|G|1900

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BB

mS38