IL_6XYW_175

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_175 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2919

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6XYW|1|2|C|1756
6XYW|1|2|A|1757
6XYW|1|2|C|1758
*
6XYW|1|2|G|1887
6XYW|1|2|A|1888
6XYW|1|2|A|1889
6XYW|1|2|G|1890

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

mS38

Chain Bk

Ribosomal protein S12, mitochondrial