IL_6XYW_185
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AUCCC*GACCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_185 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.2751
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6XYW|1|3|A|36
6XYW|1|3|U|37
6XYW|1|3|C|38
6XYW|1|3|C|39
6XYW|1|3|C|40
*
6XYW|1|3|G|46
6XYW|1|3|A|47
6XYW|1|3|C|48
6XYW|1|3|C|49
6XYW|1|3|U|50
Current chains
- Chain 3
- RNA (118-MER)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Ribosomal protein L31
- Chain AF
- At4g05400
- Chain AI
- At1g14620/T5E21_15
- Chain AR
- UNK-6
- Chain Ae
- 60S ribosomal protein L5, mitochondrial
- Chain Ao
- At5g27820
Coloring options: