IL_6XYW_192

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAGC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_192 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2854

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6XYW|1|1|G|852
6XYW|1|1|A|853
6XYW|1|1|G|854
6XYW|1|1|C|855
*
6XYW|1|1|G|863
6XYW|1|1|G|864
6XYW|1|1|C|865
6XYW|1|1|C|866

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Bn

At1g15810/F7H2_23