IL_6XYW_199

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCGAG*CUCCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_199 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.333

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6XYW|1|1|U|1187
6XYW|1|1|C|1188
6XYW|1|1|G|1189
6XYW|1|1|A|1190
6XYW|1|1|G|1191
*
6XYW|1|1|C|1262
6XYW|1|1|U|1263
6XYW|1|1|C|1264
6XYW|1|1|C|1265
6XYW|1|1|A|1266

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Av

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein