IL_6XYW_215

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_215 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.2262

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6XYW|1|2|U|130
6XYW|1|2|G|131
6XYW|1|2|U|132
*
6XYW|1|2|A|150
6XYW|1|2|A|151
6XYW|1|2|G|152

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BI

rPPR*

Chain BJ

rPPR*