IL_6XYW_218
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_218 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1876
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6XYW|1|2|G|668
6XYW|1|2|G|669
6XYW|1|2|A|670
6XYW|1|2|A|671
6XYW|1|2|U|672
*
6XYW|1|2|G|708
6XYW|1|2|G|709
6XYW|1|2|A|710
6XYW|1|2|A|711
6XYW|1|2|C|712
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Ab
- Expressed protein
- Chain Be
- Translation elongation factor EF1B/ribosomal protein S6 family protein
- Chain Bj
- Probable ribosomal protein S11, mitochondrial
- Chain Bq
- F10K1.8 protein
- Chain Bs
- Ribosomal protein S21 family protein
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