IL_6XYW_219

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGAGUACGG*CCAAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_219 not in the Motif Atlas

Homologous match to IL_6CZR_146

Geometric discrepancy: 0.1523

The information below is about IL_6CZR_146

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6XYW|1|2|G|880
6XYW|1|2|G|881
6XYW|1|2|A|882
6XYW|1|2|G|883
6XYW|1|2|U|884
6XYW|1|2|A|885
6XYW|1|2|C|886
6XYW|1|2|G|887
6XYW|1|2|G|888
*
6XYW|1|2|C|897
6XYW|1|2|C|898
6XYW|1|2|A|899
6XYW|1|2|A|900
6XYW|1|2|A|901
6XYW|1|2|A|902
6XYW|1|2|C|903

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

mS38

Chain Bk

Ribosomal protein S12, mitochondrial