IL_6XYW_223

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_223 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2395

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6XYW|1|2|C|1005
6XYW|1|2|U|1006
6XYW|1|2|A|1007
*
6XYW|1|2|U|1020
6XYW|1|2|G|1021
6XYW|1|2|G|1022

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BF

mS31/mS46

Chain Bm

At2g34520