3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_025 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0582
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XZ7|1|A|G|856
6XZ7|1|A|G|857
6XZ7|1|A|G|858
6XZ7|1|A|G|859
6XZ7|1|A|U|860
6XZ7|1|A|A|861
6XZ7|1|A|G|862
*
6XZ7|1|A|C|915
6XZ7|1|A|G|916
6XZ7|1|A|A|917
6XZ7|1|A|A|918
6XZ7|1|A|U|919
6XZ7|1|A|A|920
6XZ7|1|A|C|921

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain Z
50S ribosomal protein L30

Coloring options:


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