3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6XZ7|1|A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_038 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.0539
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6XZ7|1|A|C|1043
6XZ7|1|A|C|1044
6XZ7|1|A|C|1045
6XZ7|1|A|A|1046
6XZ7|1|A|G|1047
6XZ7|1|A|A|1048
6XZ7|1|A|C|1049
6XZ7|1|A|A|1050
6XZ7|1|A|G|1051
*
6XZ7|1|A|U|1108
6XZ7|1|A|C|1109
6XZ7|1|A|G|1110
6XZ7|1|A|A|1111
6XZ7|1|A|G|1112

Current chains

Chain A
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L6
Chain H
50S ribosomal protein L10

Coloring options:


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