3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
6XZ7|1|A|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_052 not in the Motif Atlas
Homologous match to IL_5J7L_297
Geometric discrepancy: 0.0701
The information below is about IL_5J7L_297
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6XZ7|1|A|C|1437
6XZ7|1|A|U|1438
6XZ7|1|A|A|1439
6XZ7|1|A|U|1440
*
6XZ7|1|A|A|1551
6XZ7|1|A|A|1552
6XZ7|1|A|A|1553
6XZ7|1|A|U|1554
6XZ7|1|A|G|1555

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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