IL_6XZ7_078

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

6XZ7|1|A|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_078 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.124

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XZ7|1|A|G|2067
6XZ7|1|A|U|2068
6XZ7|1|A|G7M|2069
6XZ7|1|A|A|2070
*
6XZ7|1|A|U|2441
6XZ7|1|A|C|2442
6XZ7|1|A|C|2443

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15