IL_6XZ7_084

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6XZ7|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_084 not in the Motif Atlas

Geometric match to IL_5J7L_329

Geometric discrepancy: 0.1139

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZ7|1|A|G|2124
6XZ7|1|A|G|2125
6XZ7|1|A|A|2126
6XZ7|1|A|G|2127
6XZ7|1|A|G|2128
*
6XZ7|1|A|C|2160
6XZ7|1|A|C|2161
6XZ7|1|A|G|2162
6XZ7|1|A|A|2163
6XZ7|1|A|C|2164
6XZ7|1|A|C|2165
6XZ7|1|A|U|2166
6XZ7|1|A|U|2167
6XZ7|1|A|G|2168
6XZ7|1|A|A|2169
6XZ7|1|A|A|2170
6XZ7|1|A|A|2171
6XZ7|1|A|U|2172
6XZ7|1|A|A|2173
6XZ7|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains