IL_6XZ7_117

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_117 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0385

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6XZ7|1|A|G|1666
6XZ7|1|A|G|1667
6XZ7|1|A|A|1668
6XZ7|1|A|A|1669
6XZ7|1|A|C|1670
6XZ7|1|A|U|1671
6XZ7|1|A|A|1672
6XZ7|1|A|G|1673
6XZ7|1|A|G|1674
*
6XZ7|1|A|C|1990
6XZ7|1|A|U|1991
6XZ7|1|A|G|1992
6XZ7|1|A|U|1993
6XZ7|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14