IL_6XZ7_118

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_118 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XZ7|1|A|U|1851
6XZ7|1|A|U|1852
6XZ7|1|A|A|1853
6XZ7|1|A|A|1854
6XZ7|1|A|U|1855
6XZ7|1|A|U|1856
6XZ7|1|A|G|1857
6XZ7|1|A|A|1858
6XZ7|1|A|U|1859
6XZ7|1|A|G|1860
*
6XZ7|1|A|U|1882
6XZ7|1|A|U|1883
6XZ7|1|A|G|1884
6XZ7|1|A|A|1885
6XZ7|1|A|U|1886
6XZ7|1|A|C|1887
6XZ7|1|A|G|1888
6XZ7|1|A|A|1889
6XZ7|1|A|A|1890
6XZ7|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains