IL_6XZ7_125

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_125 not in the Motif Atlas

Homologous match to IL_5J7L_394

Geometric discrepancy: 0.0669

The information below is about IL_5J7L_394

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6XZ7|1|A|C|2507
6XZ7|1|A|G|2508
*
6XZ7|1|A|PSU|2580
6XZ7|1|A|G|2581
6XZ7|1|A|G|2582

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain g

Transfer RNA; tRNA