IL_6XZA_010

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_010 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.084

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6XZA|1|A1|C|132
6XZA|1|A1|U|133
6XZA|1|A1|G|134
6XZA|1|A1|C|135
6XZA|1|A1|C|136
*
6XZA|1|A1|G|227
6XZA|1|A1|A|228
6XZA|1|A1|U|229
6XZA|1|A1|G|230

Current chains

Chain A1

16S rRNA

Nearby chains

Chain P1

30S ribosomal protein S16

Chain T1

30S ribosomal protein S20