IL_6XZA_016

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1155

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6XZA|1|A1|G|292
6XZA|1|A1|G|293
*
6XZA|1|A1|U|304
6XZA|1|A1|G|305
6XZA|1|A1|A|306
6XZA|1|A1|C|307
6XZA|1|A1|C|308

Current chains

Chain A1

16S rRNA

Nearby chains

Chain L1

30S ribosomal protein S12

Chain P1

30S ribosomal protein S16