IL_6XZA_025
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGCCAG*CGGUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6XZA|1|A1|A|532, 6XZA|1|A1|U|534
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZA_025 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.1468
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XZA|1|A1|G|515
6XZA|1|A1|G|517
6XZA|1|A1|C|518
6XZA|1|A1|C|519
6XZA|1|A1|A|520
6XZA|1|A1|G|521
*
6XZA|1|A1|C|528
6XZA|1|A1|G|529
6XZA|1|A1|G|530
6XZA|1|A1|U|531
6XZA|1|A1|A|532
6XZA|1|A1|A|533
6XZA|1|A1|U|534
6XZA|1|A1|A|535
6XZA|1|A1|C|536
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain C1
- 30S ribosomal protein S3
- Chain D1
- 30S ribosomal protein S4
- Chain L1
- 30S ribosomal protein S12
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