3D structure

PDB id
6XZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGCCAG*CGGUAAUAC
Length
15 nucleotides
Bulged bases
6XZA|1|A1|A|532, 6XZA|1|A1|U|534
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZA_025 not in the Motif Atlas
Homologous match to IL_5J7L_025
Geometric discrepancy: 0.1468
The information below is about IL_5J7L_025
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XZA|1|A1|G|515
6XZA|1|A1|G|517
6XZA|1|A1|C|518
6XZA|1|A1|C|519
6XZA|1|A1|A|520
6XZA|1|A1|G|521
*
6XZA|1|A1|C|528
6XZA|1|A1|G|529
6XZA|1|A1|G|530
6XZA|1|A1|U|531
6XZA|1|A1|A|532
6XZA|1|A1|A|533
6XZA|1|A1|U|534
6XZA|1|A1|A|535
6XZA|1|A1|C|536

Current chains

Chain A1
16S rRNA

Nearby chains

Chain C1
30S ribosomal protein S3
Chain D1
30S ribosomal protein S4
Chain L1
30S ribosomal protein S12

Coloring options:


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