IL_6XZA_026

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6XZA|1|A1|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_026 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6XZA|1|A1|C|569
6XZA|1|A1|G|570
6XZA|1|A1|U|571
6XZA|1|A1|A|572
6XZA|1|A1|A|573
6XZA|1|A1|A|574
6XZA|1|A1|G|575
*
6XZA|1|A1|C|880
6XZA|1|A1|G|881

Current chains

Chain A1

16S rRNA

Nearby chains

Chain H1

30S ribosomal protein S8

Chain L1

30S ribosomal protein S12

Chain Q1

30S ribosomal protein S17