IL_6XZA_029

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_029 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1181

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6XZA|1|A1|G|597
6XZA|1|A1|U|598
*
6XZA|1|A1|A|640
6XZA|1|A1|U|641
6XZA|1|A1|A|642
6XZA|1|A1|C|643

Current chains

Chain A1

16S rRNA

Nearby chains

Chain H1

30S ribosomal protein S8

Chain Q1

30S ribosomal protein S17