IL_6XZA_045

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6XZA|1|A1|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_045 not in the Motif Atlas

Geometric match to IL_5J7L_046

Geometric discrepancy: 0.1145

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6XZA|1|A1|G|1048
6XZA|1|A1|U|1049
6XZA|1|A1|G|1050
*
6XZA|1|A1|C|1208
6XZA|1|A1|C|1209

Current chains

Chain A1

16S rRNA

Nearby chains

Chain N1

30S ribosomal protein S14