IL_6XZA_046

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCU*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_046 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.1151

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A1|G|1050
6XZA|1|A1|C|1051
6XZA|1|A1|U|1052
*
6XZA|1|A1|G|1206
6XZA|1|A1|C|1208

Current chains

Chain A1

16S rRNA

Nearby chains

Chain C1

30S ribosomal protein S3

Chain N1

30S ribosomal protein S14