IL_6XZA_047

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6XZA|1|A1|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_047 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.0804

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6XZA|1|A1|U|1052
6XZA|1|A1|G|1053
6XZA|1|A1|C|1054
6XZA|1|A1|A|1055
6XZA|1|A1|U|1056
*
6XZA|1|A1|A|1204
6XZA|1|A1|U|1205
6XZA|1|A1|G|1206

Current chains

Chain A1

16S rRNA

Nearby chains

Chain C1

30S ribosomal protein S3

Chain J1

30S ribosomal protein S10

Chain N1

30S ribosomal protein S14