IL_6XZA_064

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_064 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.46

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6XZA|1|A1|U|1440
6XZA|1|A1|A|1441
6XZA|1|A1|G|1442
*
6XZA|1|A1|C|1460
6XZA|1|A1|G|1461

Current chains

Chain A1

16S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain P2

50S ribosomal protein L19

Chain T1

30S ribosomal protein S20