IL_6XZA_076

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6XZA|1|A2|A|504, 6XZA|1|A2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_076 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6XZA|1|A2|G|481
6XZA|1|A2|A|482
6XZA|1|A2|A|483
6XZA|1|A2|C|484
*
6XZA|1|A2|G|496
6XZA|1|A2|A|497
6XZA|1|A2|G|498
6XZA|1|A2|U|499
6XZA|1|A2|G|500
6XZA|1|A2|A|501
6XZA|1|A2|A|502
6XZA|1|A2|A|503
6XZA|1|A2|A|504
6XZA|1|A2|A|505
6XZA|1|A2|G|506
6XZA|1|A2|A|507
6XZA|1|A2|A|508
6XZA|1|A2|C|509

Current chains

Chain A2

23S rRNA

Nearby chains

Chain S2

50S ribosomal protein L22

Chain U2

50S ribosomal protein L24