IL_6XZA_105

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6XZA|1|A2|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_105 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2343

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A2|G|1087
6XZA|1|A2|A|1088
6XZA|1|A2|A|1089
6XZA|1|A2|A|1090
6XZA|1|A2|G|1091
*
6XZA|1|A2|C|1100
6XZA|1|A2|U|1101
6XZA|1|A2|C|1102

Current chains

Chain A2

23S rRNA

Nearby chains

Chain I2

50S ribosomal protein L11

Chain e2

50S ribosomal protein L36