IL_6XZA_113

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_113 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0604

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6XZA|1|A2|C|1357
6XZA|1|A2|G|1358
6XZA|1|A2|A|1359
6XZA|1|A2|G|1360
6XZA|1|A2|G|1361
*
6XZA|1|A2|C|1370
6XZA|1|A2|G|1371
6XZA|1|A2|U|1372
6XZA|1|A2|A|1373
6XZA|1|A2|G|1374

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain c2

50S ribosomal protein L34