IL_6XZA_124

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_124 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0468

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|G|1651
6XZA|1|A2|A|1652
6XZA|1|A2|G|1653
6XZA|1|A2|A|1654
6XZA|1|A2|A|1655
6XZA|1|A2|C|1656
*
6XZA|1|A2|G|2004
6XZA|1|A2|A|2005
6XZA|1|A2|C|2006

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain N2

50S ribosomal protein L17