IL_6XZA_128

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6XZA|1|A2|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_128 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0492

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XZA|1|A2|C|1686
6XZA|1|A2|G|1687
6XZA|1|A2|U|1688
6XZA|1|A2|A|1689
6XZA|1|A2|A|1690
6XZA|1|A2|C|1691
*
6XZA|1|A2|G|1696
6XZA|1|A2|G|1697
6XZA|1|A2|A|1698
6XZA|1|A2|G|1699
6XZA|1|A2|A|1700
6XZA|1|A2|A|1701
6XZA|1|A2|G|1702

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2