IL_6XZA_148

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

6XZA|1|A2|U|2111, 6XZA|1|A2|U|2118, 6XZA|1|A2|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_148 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZA|1|A2|G|2107
6XZA|1|A2|A|2108
6XZA|1|A2|U|2109
6XZA|1|A2|G|2110
6XZA|1|A2|U|2111
6XZA|1|A2|G|2112
6XZA|1|A2|U|2113
6XZA|1|A2|A|2114
6XZA|1|A2|G|2115
6XZA|1|A2|G|2116
6XZA|1|A2|A|2117
6XZA|1|A2|U|2118
6XZA|1|A2|A|2119
6XZA|1|A2|G|2120
6XZA|1|A2|G|2121
6XZA|1|A2|U|2122
6XZA|1|A2|G|2123
*
6XZA|1|A2|C|2175
6XZA|1|A2|A|2176
6XZA|1|A2|C|2177
6XZA|1|A2|C|2178
6XZA|1|A2|C|2179
6XZA|1|A2|U|2180
6XZA|1|A2|U|2181
6XZA|1|A2|U|2182

Current chains

Chain A2

23S rRNA

Nearby chains