IL_6XZA_171

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_171 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6XZA|1|A2|C|2806
6XZA|1|A2|U|2807
6XZA|1|A2|G|2808
6XZA|1|A2|A|2809
6XZA|1|A2|A|2810
6XZA|1|A2|G|2811
*
6XZA|1|A2|C|2889
6XZA|1|A2|G|2890
6XZA|1|A2|U|2891
6XZA|1|A2|G|2892

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32