IL_6XZA_190

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

6XZA|1|A2|A|2126, 6XZA|1|A2|C|2161, 6XZA|1|A2|C|2164, 6XZA|1|A2|C|2165, 6XZA|1|A2|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_190 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZA|1|A2|G|2123
6XZA|1|A2|G|2124
6XZA|1|A2|G|2125
6XZA|1|A2|A|2126
6XZA|1|A2|G|2127
6XZA|1|A2|G|2128
*
6XZA|1|A2|C|2160
6XZA|1|A2|C|2161
6XZA|1|A2|G|2162
6XZA|1|A2|A|2163
6XZA|1|A2|C|2164
6XZA|1|A2|C|2165
6XZA|1|A2|U|2166
6XZA|1|A2|U|2167
6XZA|1|A2|G|2168
6XZA|1|A2|A|2169
6XZA|1|A2|A|2170
6XZA|1|A2|A|2171
6XZA|1|A2|U|2172
6XZA|1|A2|A|2173
6XZA|1|A2|C|2174
6XZA|1|A2|C|2175

Current chains

Chain A2

23S rRNA

Nearby chains