IL_6XZB_016

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1154

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6XZB|1|A1|G|292
6XZB|1|A1|G|293
*
6XZB|1|A1|U|304
6XZB|1|A1|G|305
6XZB|1|A1|A|306
6XZB|1|A1|C|307
6XZB|1|A1|C|308

Current chains

Chain A1

16S rRNA

Nearby chains

Chain L1

30S ribosomal protein S12

Chain P1

30S ribosomal protein S16