IL_6XZB_024

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_024 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0591

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6XZB|1|A1|C|504
6XZB|1|A1|G|505
6XZB|1|A1|G|506
6XZB|1|A1|C|507
6XZB|1|A1|U|508
6XZB|1|A1|A|509
6XZB|1|A1|A|510
6XZB|1|A1|C|511
*
6XZB|1|A1|G|540
6XZB|1|A1|G|541

Current chains

Chain A1

16S rRNA

Nearby chains

Chain D1

30S ribosomal protein S4

Chain L1

30S ribosomal protein S12