3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_034 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0744
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6XZB|1|A1|A|673
6XZB|1|A1|G|674
6XZB|1|A1|A|675
6XZB|1|A1|A|676
6XZB|1|A1|U|677
6XZB|1|A1|U|678
*
6XZB|1|A1|A|712
6XZB|1|A1|G|713
6XZB|1|A1|G|714
6XZB|1|A1|A|715
6XZB|1|A1|A|716
6XZB|1|A1|U|717

Current chains

Chain A1
16S rRNA

Nearby chains

Chain C2
50S ribosomal protein L2
Chain F1
30S ribosomal protein S6
Chain K1
30S ribosomal protein S11
Chain R1
30S ribosomal protein S18
Chain U1
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2532 s