IL_6XZB_037

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_037 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0708

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6XZB|1|A1|C|779
6XZB|1|A1|A|780
6XZB|1|A1|A|781
6XZB|1|A1|A|782
6XZB|1|A1|C|783
*
6XZB|1|A1|G|799
6XZB|1|A1|G|800
6XZB|1|A1|U|801
6XZB|1|A1|A|802
6XZB|1|A1|G|803

Current chains

Chain A1

16S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain K1

30S ribosomal protein S11

Chain U1

30S ribosomal protein S21