IL_6XZB_041

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6XZB|1|A1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1448

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XZB|1|A1|G|933
6XZB|1|A1|C|934
6XZB|1|A1|A|935
*
6XZB|1|A1|U|1380
6XZB|1|A1|U|1381
6XZB|1|A1|C|1382
6XZB|1|A1|C|1383
6XZB|1|A1|C|1384

Current chains

Chain A1

16S rRNA

Nearby chains

Chain G1

30S ribosomal protein S7

Chain I1

30S ribosomal protein S9

Chain f2

Transfer RNA; tRNA