IL_6XZB_051

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_051 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1061

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6XZB|1|A1|G|1124
6XZB|1|A1|U|1125
6XZB|1|A1|U|1126
6XZB|1|A1|G|1127
6XZB|1|A1|C|1128
*
6XZB|1|A1|G|1144
6XZB|1|A1|A|1145
6XZB|1|A1|A|1146
6XZB|1|A1|C|1147
6XZB|1|A1|U|1148
6XZB|1|A1|C|1149

Current chains

Chain A1

16S rRNA

Nearby chains

Chain I1

30S ribosomal protein S9

Chain J1

30S ribosomal protein S10