3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GCC*GAAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_059 not in the Motif Atlas
Homologous match to IL_5J7L_059
Geometric discrepancy: 0.1003
The information below is about IL_5J7L_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.4
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6XZB|1|A1|G|1401
6XZB|1|A1|C|1403
6XZB|1|A1|C|1404
*
6XZB|1|A1|G|1497
6XZB|1|A1|A|1499
6XZB|1|A1|A|1500
6XZB|1|A1|C|1501

Current chains

Chain A1
16S rRNA

Nearby chains

Chain A2
Large subunit ribosomal RNA; LSU rRNA
Chain f2
Transfer RNA; tRNA

Coloring options:


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