IL_6XZB_059

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_059 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1003

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XZB|1|A1|G|1401
6XZB|1|A1|C|1403
6XZB|1|A1|C|1404
*
6XZB|1|A1|G|1497
6XZB|1|A1|A|1499
6XZB|1|A1|A|1500
6XZB|1|A1|C|1501

Current chains

Chain A1

16S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain f2

Transfer RNA; tRNA