IL_6XZB_072

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0571

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6XZB|1|A2|C|239
6XZB|1|A2|C|240
6XZB|1|A2|A|241
6XZB|1|A2|G|242
6XZB|1|A2|U|243
6XZB|1|A2|A|244
6XZB|1|A2|G|245
*
6XZB|1|A2|C|253
6XZB|1|A2|G|254
6XZB|1|A2|A|255
6XZB|1|A2|A|256
6XZB|1|A2|C|257
6XZB|1|A2|G|258

Current chains

Chain A2

23S rRNA

Nearby chains

Chain L2

50S ribosomal protein L15

Chain d2

50S ribosomal protein L35