3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_090 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0582
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XZB|1|A2|G|856
6XZB|1|A2|G|857
6XZB|1|A2|G|858
6XZB|1|A2|G|859
6XZB|1|A2|U|860
6XZB|1|A2|A|861
6XZB|1|A2|G|862
*
6XZB|1|A2|C|915
6XZB|1|A2|G|916
6XZB|1|A2|A|917
6XZB|1|A2|A|918
6XZB|1|A2|U|919
6XZB|1|A2|A|920
6XZB|1|A2|C|921

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain M2
50S ribosomal protein L16
Chain W2
50S ribosomal protein L27
Chain Z2
50S ribosomal protein L30

Coloring options:


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