IL_6XZB_092

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_092 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.0654

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6XZB|1|A2|G|864
6XZB|1|A2|C|865
6XZB|1|A2|A|866
6XZB|1|A2|C|867
6XZB|1|A2|U|868
*
6XZB|1|A2|A|909
6XZB|1|A2|A|910
6XZB|1|A2|A|911
6XZB|1|A2|C|912

Current chains

Chain A2

23S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain M2

50S ribosomal protein L16