IL_6XZB_108

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6XZB|1|A2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0615

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6XZB|1|A2|C|1208
6XZB|1|A2|U|1209
6XZB|1|A2|G|1210
6XZB|1|A2|C|1211
6XZB|1|A2|G|1212
6XZB|1|A2|A|1213
6XZB|1|A2|A|1214
6XZB|1|A2|G|1215
*
6XZB|1|A2|U|1234
6XZB|1|A2|G|1235
6XZB|1|A2|G|1236
6XZB|1|A2|A|1237
6XZB|1|A2|G|1238

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Q2

50S ribosomal protein L20